rs28306371 SNP Detail

Summary

• ID
  rs28306371
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113879080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAATCTA AAACATATGC
  TTCCCCTACA ACACACTGCT AGGAACAGGT GGGGCATGAG TCTCTACAAT GTACTAATAG
  ATGATCCAGT ACGGACTGCC AAGACATAGA CAACTGTGTT CAGTGCCTGT TTGCAATGAA
  CATTTGTTGC AGCCATCAGG AATATGGAGA TATATCACAA AAAGAATGAC ACATGTTTAA
  R
  TGAAAATTAG CCTACTTTGT TTTGTTTTGA GATGAATCTC ACTCTGTAGC CCAAGCAAAA
  GTTGAACTCA AGTTAATACT CCTGCCTCAG TTTCTGAGTA CTGGGATTGC AGGTGTGAGC
  TAACACACCT GGCTCATACT TTTCATTTAT GGACTAAAAT CAGATTCCAG CTTCATCTGT
  AGGAAAGCTA TTTGGTGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667308	NES09035398	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	A	A	A	G		A	A	G	A
ss147245800	ENSMUSSNP1670042	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28306371					SNP	A	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667308	NES09035398	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113879080 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr600	transcription start site region 600	1030 bp upstream
Tssr601	transcription start site region 601	1019 bp upstream
Tssr602	transcription start site region 602	1878 bp downstream
Tssr19429	transcription start site region 19429	1302 bp downstream
Tssr19430	transcription start site region 19430	1192 bp downstream
Tssr19431	transcription start site region 19431	1108 bp downstream
Tssr19432	transcription start site region 19432	1025 bp downstream
Tssr19433	transcription start site region 19433	435 bp downstream
Tssr19434	transcription start site region 19434	391 bp downstream
Tssr19435	transcription start site region 19435	570 bp upstream
Tssr19436	transcription start site region 19436	951 bp upstream
Tssr19437	transcription start site region 19437	1686 bp upstream
Tssr19438	transcription start site region 19438	1769 bp upstream
Tssr19439	transcription start site region 19439	1834 bp upstream
Tssr25660	transcription start site region 25660	1281 bp upstream
Tssr25661	transcription start site region 25661	1260 bp upstream
Tssr25662	transcription start site region 25662	1157 bp upstream
Tssr25663	transcription start site region 25663	1131 bp upstream
Tssr25664	transcription start site region 25664	1090 bp upstream
Tssr25665	transcription start site region 25665	982 bp upstream
Tssr25666	transcription start site region 25666	428 bp upstream
Tssr25667	transcription start site region 25667	385 bp upstream
Tssr25668	transcription start site region 25668	358 bp upstream
Tssr25669	transcription start site region 25669	295 bp upstream
Tssr25670	transcription start site region 25670	602 bp downstream
Tssr25671	transcription start site region 25671	645 bp downstream
Tssr25672	transcription start site region 25672	714 bp downstream
Tssr25673	transcription start site region 25673	749 bp downstream
Tssr25674	transcription start site region 25674	953 bp downstream
Tssr25675	transcription start site region 25675	1001 bp downstream
Tssr25676	transcription start site region 25676	1038 bp downstream
Tssr25677	transcription start site region 25677	1065 bp downstream
Tssr25678	transcription start site region 25678	1737 bp downstream
Tssr25679	transcription start site region 25679	1746 bp downstream
Tssr25680	transcription start site region 25680	1759 bp downstream
Tssr25681	transcription start site region 25681	1806 bp downstream
Tssr25682	transcription start site region 25682	1888 bp downstream
Tssr25683	transcription start site region 25683	1895 bp downstream
Tssr25684	transcription start site region 25684	1986 bp downstream