rs28306372 SNP Detail

Summary

• ID
  rs28306372
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113879022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCA GTGCCTGTTT GCAATGAACA
  Y
  TTGTTGCAGC CATCAGGAAT ATGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37667309	NES09035397	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	C		C		C	C	C		T
ss45344533	mCV22515943	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		C
ss147245795	ENSMUSSNP4855716	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C					C
ss320462301	CHEV_2_113874277	CHEVERUD	SCREENING_POP	f	SNP													T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28306372					SNP	T	T	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667309	NES09035397	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113879022 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr600	transcription start site region 600	972 bp upstream
Tssr601	transcription start site region 601	961 bp upstream
Tssr602	transcription start site region 602	1936 bp downstream
Tssr19429	transcription start site region 19429	1244 bp downstream
Tssr19430	transcription start site region 19430	1134 bp downstream
Tssr19431	transcription start site region 19431	1050 bp downstream
Tssr19432	transcription start site region 19432	967 bp downstream
Tssr19433	transcription start site region 19433	377 bp downstream
Tssr19434	transcription start site region 19434	333 bp downstream
Tssr19435	transcription start site region 19435	628 bp upstream
Tssr19436	transcription start site region 19436	1009 bp upstream
Tssr19437	transcription start site region 19437	1744 bp upstream
Tssr19438	transcription start site region 19438	1827 bp upstream
Tssr19439	transcription start site region 19439	1892 bp upstream
Tssr25660	transcription start site region 25660	1223 bp upstream
Tssr25661	transcription start site region 25661	1202 bp upstream
Tssr25662	transcription start site region 25662	1099 bp upstream
Tssr25663	transcription start site region 25663	1073 bp upstream
Tssr25664	transcription start site region 25664	1032 bp upstream
Tssr25665	transcription start site region 25665	924 bp upstream
Tssr25666	transcription start site region 25666	370 bp upstream
Tssr25667	transcription start site region 25667	327 bp upstream
Tssr25668	transcription start site region 25668	300 bp upstream
Tssr25669	transcription start site region 25669	237 bp upstream
Tssr25670	transcription start site region 25670	660 bp downstream
Tssr25671	transcription start site region 25671	703 bp downstream
Tssr25672	transcription start site region 25672	772 bp downstream
Tssr25673	transcription start site region 25673	807 bp downstream
Tssr25674	transcription start site region 25674	1011 bp downstream
Tssr25675	transcription start site region 25675	1059 bp downstream
Tssr25676	transcription start site region 25676	1096 bp downstream
Tssr25677	transcription start site region 25677	1123 bp downstream
Tssr25678	transcription start site region 25678	1795 bp downstream
Tssr25679	transcription start site region 25679	1804 bp downstream
Tssr25680	transcription start site region 25680	1817 bp downstream
Tssr25681	transcription start site region 25681	1864 bp downstream
Tssr25682	transcription start site region 25682	1946 bp downstream
Tssr25683	transcription start site region 25683	1953 bp downstream