rs28306373 SNP Detail

Summary

• ID
  rs28306373
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113878972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGT ACTAATAGAT GATCCAGTAC
  R
  GACTGCCAAG ACATAGACAA CTGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37667310	NES09035396	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		A	A	A	A		A		A	A	A		G
ss45202268	mCV22515942	ABI	CRAMUS_MOUSE	f	SNP		G	A					G		A
ss147245791	ENSMUSSNP4434259	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A					A
ss320462300	CHEV_2_113874227	CHEVERUD	SCREENING_POP	f	SNP													G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28306373					SNP	G	G	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667310	NES09035396	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113878972 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr600	transcription start site region 600	922 bp upstream
Tssr601	transcription start site region 601	911 bp upstream
Tssr602	transcription start site region 602	1986 bp downstream
Tssr19429	transcription start site region 19429	1194 bp downstream
Tssr19430	transcription start site region 19430	1084 bp downstream
Tssr19431	transcription start site region 19431	1000 bp downstream
Tssr19432	transcription start site region 19432	917 bp downstream
Tssr19433	transcription start site region 19433	327 bp downstream
Tssr19434	transcription start site region 19434	283 bp downstream
Tssr19435	transcription start site region 19435	678 bp upstream
Tssr19436	transcription start site region 19436	1059 bp upstream
Tssr19437	transcription start site region 19437	1794 bp upstream
Tssr19438	transcription start site region 19438	1877 bp upstream
Tssr19439	transcription start site region 19439	1942 bp upstream
Tssr25660	transcription start site region 25660	1173 bp upstream
Tssr25661	transcription start site region 25661	1152 bp upstream
Tssr25662	transcription start site region 25662	1049 bp upstream
Tssr25663	transcription start site region 25663	1023 bp upstream
Tssr25664	transcription start site region 25664	982 bp upstream
Tssr25665	transcription start site region 25665	874 bp upstream
Tssr25666	transcription start site region 25666	320 bp upstream
Tssr25667	transcription start site region 25667	277 bp upstream
Tssr25668	transcription start site region 25668	250 bp upstream
Tssr25669	transcription start site region 25669	187 bp upstream
Tssr25670	transcription start site region 25670	710 bp downstream
Tssr25671	transcription start site region 25671	753 bp downstream
Tssr25672	transcription start site region 25672	822 bp downstream
Tssr25673	transcription start site region 25673	857 bp downstream
Tssr25674	transcription start site region 25674	1061 bp downstream
Tssr25675	transcription start site region 25675	1109 bp downstream
Tssr25676	transcription start site region 25676	1146 bp downstream
Tssr25677	transcription start site region 25677	1173 bp downstream
Tssr25678	transcription start site region 25678	1845 bp downstream
Tssr25679	transcription start site region 25679	1854 bp downstream
Tssr25680	transcription start site region 25680	1867 bp downstream
Tssr25681	transcription start site region 25681	1914 bp downstream
Tssr25682	transcription start site region 25682	1996 bp downstream