rs28306374 SNP Detail

Summary

• ID
  rs28306374
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113878933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTTCATG ATGCTGTTGT
  AAGTAGTTTC ATGAATGCCA GCAGATTCCA TACCTAGGAA AAAGTTCTTT TTAAAGTATT
  TGCAGCACAT TCAGGCTAGG ATGGAGGGGG GAAAATGGAA TTCCTCTGGG TTGGTGAGCT
  GCCAACATTC AAATCTAAAA CATATGCTTC CCCTACAACA CACTGCTAGG AACAGGTGGG
  R
  CATGAGTCTC TACAATGTAC TAATAGATGA TCCAGTACGG ACTGCCAAGA CATAGACAAC
  TGTGTTCAGT GCCTGTTTGC AATGAACATT TGTTGCAGCC ATCAGGAATA TGGAGATATA
  TCACAAAAAG AATGACACAT GTTTAAATGA AAATTAGCCT ACTTTGTTTT GTTTTGAGAT
  GAATCTCACT CTGTAGCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667311	NES09035394	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	A	G	G	G	A		G	G	A	G
ss147245786	ENSMUSSNP3399509	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28306374					SNP	G	G	G	G	G	G	G	A	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667311	NES09035394	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113878933 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Rr562816	regulatory region 562816	643 bp distal
Tssr600	transcription start site region 600	883 bp upstream
Tssr601	transcription start site region 601	872 bp upstream
Tssr19429	transcription start site region 19429	1155 bp downstream
Tssr19430	transcription start site region 19430	1045 bp downstream
Tssr19431	transcription start site region 19431	961 bp downstream
Tssr19432	transcription start site region 19432	878 bp downstream
Tssr19433	transcription start site region 19433	288 bp downstream
Tssr19434	transcription start site region 19434	244 bp downstream
Tssr19435	transcription start site region 19435	717 bp upstream
Tssr19436	transcription start site region 19436	1098 bp upstream
Tssr19437	transcription start site region 19437	1833 bp upstream
Tssr19438	transcription start site region 19438	1916 bp upstream
Tssr19439	transcription start site region 19439	1981 bp upstream
Tssr25660	transcription start site region 25660	1134 bp upstream
Tssr25661	transcription start site region 25661	1113 bp upstream
Tssr25662	transcription start site region 25662	1010 bp upstream
Tssr25663	transcription start site region 25663	984 bp upstream
Tssr25664	transcription start site region 25664	943 bp upstream
Tssr25665	transcription start site region 25665	835 bp upstream
Tssr25666	transcription start site region 25666	281 bp upstream
Tssr25667	transcription start site region 25667	238 bp upstream
Tssr25668	transcription start site region 25668	211 bp upstream
Tssr25669	transcription start site region 25669	148 bp upstream
Tssr25670	transcription start site region 25670	749 bp downstream
Tssr25671	transcription start site region 25671	792 bp downstream
Tssr25672	transcription start site region 25672	861 bp downstream
Tssr25673	transcription start site region 25673	896 bp downstream
Tssr25674	transcription start site region 25674	1100 bp downstream
Tssr25675	transcription start site region 25675	1148 bp downstream
Tssr25676	transcription start site region 25676	1185 bp downstream
Tssr25677	transcription start site region 25677	1212 bp downstream
Tssr25678	transcription start site region 25678	1884 bp downstream
Tssr25679	transcription start site region 25679	1893 bp downstream
Tssr25680	transcription start site region 25680	1906 bp downstream
Tssr25681	transcription start site region 25681	1953 bp downstream