rs28306375 SNP Detail

Summary

• ID
  rs28306375
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113878900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGGCATAC AGGTCTTTGC
  GGATATCGAT GTCACACTTC ATGATGCTGT TGTAAGTAGT TTCATGAATG CCAGCAGATT
  CCATACCTAG GAAAAAGTTC TTTTTAAAGT ATTTGCAGCA CATTCAGGCT AGGATGGAGG
  GGGGAAAATG GAATTCCTCT GGGTTGGTGA GCTGCCAACA TTCAAATCTA AAACATATGC
  Y
  TCCCCTACAA CACACTGCTA GGAACAGGTG GGGCATGAGT CTCTACAATG TACTAATAGA
  TGATCCAGTA CGGACTGCCA AGACATAGAC AACTGTGTTC AGTGCCTGTT TGCAATGAAC
  ATTTGTTGCA GCCATCAGGA ATATGGAGAT ATATCACAAA AAGAATGACA CATGTTTAAA
  TGAAAATTAG CCTACTTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667312	NES09035393	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	T	T	C		T	T	C	T
ss147245780	ENSMUSSNP5525176	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28306375					SNP	T	T	T	T	T	T	T	C	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667312	NES09035393	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113878900 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr600	transcription start site region 600	850 bp upstream
Tssr601	transcription start site region 601	839 bp upstream
Tssr19429	transcription start site region 19429	1122 bp downstream
Tssr19430	transcription start site region 19430	1012 bp downstream
Tssr19431	transcription start site region 19431	928 bp downstream
Tssr19432	transcription start site region 19432	845 bp downstream
Tssr19433	transcription start site region 19433	255 bp downstream
Tssr19434	transcription start site region 19434	211 bp downstream
Tssr19435	transcription start site region 19435	750 bp upstream
Tssr19436	transcription start site region 19436	1131 bp upstream
Tssr19437	transcription start site region 19437	1866 bp upstream
Tssr19438	transcription start site region 19438	1949 bp upstream
Tssr25660	transcription start site region 25660	1101 bp upstream
Tssr25661	transcription start site region 25661	1080 bp upstream
Tssr25662	transcription start site region 25662	977 bp upstream
Tssr25663	transcription start site region 25663	951 bp upstream
Tssr25664	transcription start site region 25664	910 bp upstream
Tssr25665	transcription start site region 25665	802 bp upstream
Tssr25666	transcription start site region 25666	248 bp upstream
Tssr25667	transcription start site region 25667	205 bp upstream
Tssr25668	transcription start site region 25668	178 bp upstream
Tssr25669	transcription start site region 25669	115 bp upstream
Tssr25670	transcription start site region 25670	782 bp downstream
Tssr25671	transcription start site region 25671	825 bp downstream
Tssr25672	transcription start site region 25672	894 bp downstream
Tssr25673	transcription start site region 25673	929 bp downstream
Tssr25674	transcription start site region 25674	1133 bp downstream
Tssr25675	transcription start site region 25675	1181 bp downstream
Tssr25676	transcription start site region 25676	1218 bp downstream
Tssr25677	transcription start site region 25677	1245 bp downstream
Tssr25678	transcription start site region 25678	1917 bp downstream
Tssr25679	transcription start site region 25679	1926 bp downstream
Tssr25680	transcription start site region 25680	1939 bp downstream
Tssr25681	transcription start site region 25681	1986 bp downstream