rs28306376 SNP Detail

Summary

• ID
  rs28306376
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113878658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAAAGAAA TGAGGAATAG
  TGCTAACACT AAGTAGAAAA AGTCTAGAGG ATAGGAAGCT AAGATGCAGG AGAAGGAGGC
  TGGGAAGGAA GCTTGCTTTA GGGTACCAAG TTCTGCCTTT GCCTCCCCCT TCCAAGTGTT
  CCTGACCTTG ATCTTCATGG TGCTGGGAGC CAGTGCAGTG ATTTCCTTTT GCATACGATC
  R
  GCAATACCAG GGTACATGGT GGTGCCTCCA GATAGGACAT TGTTGGCATA CAGGTCTTTG
  CGGATATCGA TGTCACACTT CATGATGCTG TTGTAAGTAG TTTCATGAAT GCCAGCAGAT
  TCCATACCTA GGAAAAAGTT CTTTTTAAAG TATTTGCAGC ACATTCAGGC TAGGATGGAG
  GGGGGAAAAT GGAATTCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667313	NES09035391	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28306376					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667313	NES09035391	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113878658 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Rr562816	regulatory region 562816	368 bp distal
Tssr600	transcription start site region 600	608 bp upstream
Tssr601	transcription start site region 601	597 bp upstream
Tssr19429	transcription start site region 19429	880 bp downstream
Tssr19430	transcription start site region 19430	770 bp downstream
Tssr19431	transcription start site region 19431	686 bp downstream
Tssr19432	transcription start site region 19432	603 bp downstream
Tssr19433	transcription start site region 19433	13 bp downstream
Tssr19434	transcription start site region 19434	within coordinates
Tssr19435	transcription start site region 19435	992 bp upstream
Tssr19436	transcription start site region 19436	1373 bp upstream
Tssr25660	transcription start site region 25660	859 bp upstream
Tssr25661	transcription start site region 25661	838 bp upstream
Tssr25662	transcription start site region 25662	735 bp upstream
Tssr25663	transcription start site region 25663	709 bp upstream
Tssr25664	transcription start site region 25664	668 bp upstream
Tssr25665	transcription start site region 25665	560 bp upstream
Tssr25666	transcription start site region 25666	6 bp upstream
Tssr25667	transcription start site region 25667	3 bp downstream
Tssr25668	transcription start site region 25668	39 bp downstream
Tssr25669	transcription start site region 25669	68 bp downstream
Tssr25670	transcription start site region 25670	1024 bp downstream
Tssr25671	transcription start site region 25671	1067 bp downstream
Tssr25672	transcription start site region 25672	1136 bp downstream
Tssr25673	transcription start site region 25673	1171 bp downstream
Tssr25674	transcription start site region 25674	1375 bp downstream
Tssr25675	transcription start site region 25675	1423 bp downstream
Tssr25676	transcription start site region 25676	1460 bp downstream
Tssr25677	transcription start site region 25677	1487 bp downstream