rs28306377 SNP Detail

Summary

• ID
  rs28306377
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113878433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAATCAG GCTTTGCAAT
  CCTTCCTGTA TTTCATCATT TCTCTGCTTA TTTGTACTAA AGAATAATAT TCATGAAGGA
  TAGTTCAAAC GCTGGGGACC TTTTAAATGT GTAGATAGGT TTAGTTATTG CTTCCCCCCC
  CCCCCACACA CACACCGTGT TTCAGATATT TGCTTTTATT CACTATTTAG AAGCAGTCCT
  M
  AAGTTCCGTA TCTGTGGAGA GTGCTAGAAA GAAATGAGGA ATAGTGCTAA CACTAAGTAG
  AAAAAGTCTA GAGGATAGGA AGCTAAGATG CAGGAGAAGG AGGCTGGGAA GGAAGCTTGC
  TTTAGGGTAC CAAGTTCTGC CTTTGCCTCC CCCTTCCAAG TGTTCCTGAC CTTGATCTTC
  ATGGTGCTGG GAGCCAGTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667314	NES09035389	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28306377					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667314	NES09035389	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113878433 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Rr562816	regulatory region 562816	143 bp distal
Tssr600	transcription start site region 600	383 bp upstream
Tssr601	transcription start site region 601	372 bp upstream
Tssr19429	transcription start site region 19429	655 bp downstream
Tssr19430	transcription start site region 19430	545 bp downstream
Tssr19431	transcription start site region 19431	461 bp downstream
Tssr19432	transcription start site region 19432	378 bp downstream
Tssr19433	transcription start site region 19433	169 bp upstream
Tssr19434	transcription start site region 19434	222 bp upstream
Tssr19435	transcription start site region 19435	1217 bp upstream
Tssr19436	transcription start site region 19436	1598 bp upstream
Tssr25660	transcription start site region 25660	634 bp upstream
Tssr25661	transcription start site region 25661	613 bp upstream
Tssr25662	transcription start site region 25662	510 bp upstream
Tssr25663	transcription start site region 25663	484 bp upstream
Tssr25664	transcription start site region 25664	443 bp upstream
Tssr25665	transcription start site region 25665	335 bp upstream
Tssr25666	transcription start site region 25666	201 bp downstream
Tssr25667	transcription start site region 25667	228 bp downstream
Tssr25668	transcription start site region 25668	264 bp downstream
Tssr25669	transcription start site region 25669	293 bp downstream
Tssr25670	transcription start site region 25670	1249 bp downstream
Tssr25671	transcription start site region 25671	1292 bp downstream
Tssr25672	transcription start site region 25672	1361 bp downstream
Tssr25673	transcription start site region 25673	1396 bp downstream
Tssr25674	transcription start site region 25674	1600 bp downstream
Tssr25675	transcription start site region 25675	1648 bp downstream
Tssr25676	transcription start site region 25676	1685 bp downstream
Tssr25677	transcription start site region 25677	1712 bp downstream