rs28306378 SNP Detail

Summary

• ID
  rs28306378
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113878346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGCT GGGGACCTTT TAAATGTGTA
  S
  ATAGGTTTAG TTATTGCTTC CCCCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37667315	NES09035387	PERLEGEN	MM_PANEL2	f	SNP	G		C	G	C	G	G		G	C	G	C		G	G	C	G		G
ss45374161	mCV22515928	ABI	CRAMUS_MOUSE	f	SNP		G	C					G		C
ss147245775	ENSMUSSNP4181110	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C							C
ss320462299	CHEV_2_113873601	CHEVERUD	SCREENING_POP	f	SNP													G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28306378					SNP	G	G	C	G	C	G	G	G	G	C	G	C	G	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667315	NES09035387	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113878346 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr600	transcription start site region 600	296 bp upstream
Tssr601	transcription start site region 601	285 bp upstream
Tssr19429	transcription start site region 19429	568 bp downstream
Tssr19430	transcription start site region 19430	458 bp downstream
Tssr19431	transcription start site region 19431	374 bp downstream
Tssr19432	transcription start site region 19432	291 bp downstream
Tssr19433	transcription start site region 19433	256 bp upstream
Tssr19434	transcription start site region 19434	309 bp upstream
Tssr19435	transcription start site region 19435	1304 bp upstream
Tssr19436	transcription start site region 19436	1685 bp upstream
Tssr25660	transcription start site region 25660	547 bp upstream
Tssr25661	transcription start site region 25661	526 bp upstream
Tssr25662	transcription start site region 25662	423 bp upstream
Tssr25663	transcription start site region 25663	397 bp upstream
Tssr25664	transcription start site region 25664	356 bp upstream
Tssr25665	transcription start site region 25665	248 bp upstream
Tssr25666	transcription start site region 25666	288 bp downstream
Tssr25667	transcription start site region 25667	315 bp downstream
Tssr25668	transcription start site region 25668	351 bp downstream
Tssr25669	transcription start site region 25669	380 bp downstream
Tssr25670	transcription start site region 25670	1336 bp downstream
Tssr25671	transcription start site region 25671	1379 bp downstream
Tssr25672	transcription start site region 25672	1448 bp downstream
Tssr25673	transcription start site region 25673	1483 bp downstream
Tssr25674	transcription start site region 25674	1687 bp downstream
Tssr25675	transcription start site region 25675	1735 bp downstream
Tssr25676	transcription start site region 25676	1772 bp downstream
Tssr25677	transcription start site region 25677	1799 bp downstream