rs28306379 SNP Detail

Summary

• ID
  rs28306379
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113878329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCAACAA TGAAGTGGGC
  AACAGGCTTG GAATATTCAC AGAAAAACCA TCACAGATTA ACCGATAGTA GACAACGTAG
  GAGATGCTAT ACAATAAGCA ATGTAGCCAA TCAGGCTTTG CAATCCTTCC TGTATTTCAT
  CATTTCTCTG CTTATTTGTA CTAAAGAATA ATATTCATGA AGGATAGTTC AAACGCTGGG
  S
  ACCTTTTAAA TGTGTAGATA GGTTTAGTTA TTGCTTCCCC CCCCCCCCAC ACACACACCG
  TGTTTCAGAT ATTTGCTTTT ATTCACTATT TAGAAGCAGT CCTAAAGTTC CGTATCTGTG
  GAGAGTGCTA GAAAGAAATG AGGAATAGTG CTAACACTAA GTAGAAAAAG TCTAGAGGAT
  AGGAAGCTAA GATGCAGGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667316	NES09035385	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28306379					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667316	NES09035385	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113878329 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr600	transcription start site region 600	279 bp upstream
Tssr601	transcription start site region 601	268 bp upstream
Tssr19429	transcription start site region 19429	551 bp downstream
Tssr19430	transcription start site region 19430	441 bp downstream
Tssr19431	transcription start site region 19431	357 bp downstream
Tssr19432	transcription start site region 19432	274 bp downstream
Tssr19433	transcription start site region 19433	273 bp upstream
Tssr19434	transcription start site region 19434	326 bp upstream
Tssr19435	transcription start site region 19435	1321 bp upstream
Tssr19436	transcription start site region 19436	1702 bp upstream
Tssr25660	transcription start site region 25660	530 bp upstream
Tssr25661	transcription start site region 25661	509 bp upstream
Tssr25662	transcription start site region 25662	406 bp upstream
Tssr25663	transcription start site region 25663	380 bp upstream
Tssr25664	transcription start site region 25664	339 bp upstream
Tssr25665	transcription start site region 25665	231 bp upstream
Tssr25666	transcription start site region 25666	305 bp downstream
Tssr25667	transcription start site region 25667	332 bp downstream
Tssr25668	transcription start site region 25668	368 bp downstream
Tssr25669	transcription start site region 25669	397 bp downstream
Tssr25670	transcription start site region 25670	1353 bp downstream
Tssr25671	transcription start site region 25671	1396 bp downstream
Tssr25672	transcription start site region 25672	1465 bp downstream
Tssr25673	transcription start site region 25673	1500 bp downstream
Tssr25674	transcription start site region 25674	1704 bp downstream
Tssr25675	transcription start site region 25675	1752 bp downstream
Tssr25676	transcription start site region 25676	1789 bp downstream
Tssr25677	transcription start site region 25677	1816 bp downstream