rs28306380 SNP Detail

Summary

• ID
  rs28306380
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113878303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTA TTTGTACTAA AGAATAATAT
  K
  CATGAAGGAT AGTTCAAACG CTGGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37667317	NES09035383	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G		G	G	G	G		G	G	G		T
ss45273602	mCV22515927	ABI	CRAMUS_MOUSE	f	SNP		T	G					T		G
ss147245770	ENSMUSSNP767640	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G							G
ss320462298	CHEV_2_113873558	CHEVERUD	SCREENING_POP	f	SNP													T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28306380					SNP	T	T	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667317	NES09035383	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113878303 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr600	transcription start site region 600	253 bp upstream
Tssr601	transcription start site region 601	242 bp upstream
Tssr19429	transcription start site region 19429	525 bp downstream
Tssr19430	transcription start site region 19430	415 bp downstream
Tssr19431	transcription start site region 19431	331 bp downstream
Tssr19432	transcription start site region 19432	248 bp downstream
Tssr19433	transcription start site region 19433	299 bp upstream
Tssr19434	transcription start site region 19434	352 bp upstream
Tssr19435	transcription start site region 19435	1347 bp upstream
Tssr19436	transcription start site region 19436	1728 bp upstream
Tssr25660	transcription start site region 25660	504 bp upstream
Tssr25661	transcription start site region 25661	483 bp upstream
Tssr25662	transcription start site region 25662	380 bp upstream
Tssr25663	transcription start site region 25663	354 bp upstream
Tssr25664	transcription start site region 25664	313 bp upstream
Tssr25665	transcription start site region 25665	205 bp upstream
Tssr25666	transcription start site region 25666	331 bp downstream
Tssr25667	transcription start site region 25667	358 bp downstream
Tssr25668	transcription start site region 25668	394 bp downstream
Tssr25669	transcription start site region 25669	423 bp downstream
Tssr25670	transcription start site region 25670	1379 bp downstream
Tssr25671	transcription start site region 25671	1422 bp downstream
Tssr25672	transcription start site region 25672	1491 bp downstream
Tssr25673	transcription start site region 25673	1526 bp downstream
Tssr25674	transcription start site region 25674	1730 bp downstream
Tssr25675	transcription start site region 25675	1778 bp downstream
Tssr25676	transcription start site region 25676	1815 bp downstream
Tssr25677	transcription start site region 25677	1842 bp downstream