rs28306381 SNP Detail

Summary

• ID
  rs28306381
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113878143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTCAGAA GCACTTGCGG
  TGGACAATGG ATGGGCCTGC CTCATCATAC TCTTGCTTGC TGATCCACAT TTGCTGGAAG
  GTGGACAGAG AGGCCAGGAT GGAGCCCCCA ATCCAGACAG AGTATTTACG CTCAGGGGGA
  GCAATAATCT GCAGAGAGAA AACAAAACCA TCAGTGTGTT CTGAAGTCCC CAACAATGAA
  R
  TGGGCAACAG GCTTGGAATA TTCACAGAAA AACCATCACA GATTAACCGA TAGTAGACAA
  CGTAGGAGAT GCTATACAAT AAGCAATGTA GCCAATCAGG CTTTGCAATC CTTCCTGTAT
  TTCATCATTT CTCTGCTTAT TTGTACTAAA GAATAATATT CATGAAGGAT AGTTCAAACG
  CTGGGGACCT TTTAAATGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667318	NES09035381	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28306381					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667318	NES09035381	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113878143 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Rr562815	regulatory region 562815	1952 bp distal
Rr562816	regulatory region 562816	within coordinates
Tssr600	transcription start site region 600	93 bp upstream
Tssr601	transcription start site region 601	82 bp upstream
Tssr19429	transcription start site region 19429	365 bp downstream
Tssr19430	transcription start site region 19430	255 bp downstream
Tssr19431	transcription start site region 19431	171 bp downstream
Tssr19432	transcription start site region 19432	88 bp downstream
Tssr19433	transcription start site region 19433	459 bp upstream
Tssr19434	transcription start site region 19434	512 bp upstream
Tssr19435	transcription start site region 19435	1507 bp upstream
Tssr19436	transcription start site region 19436	1888 bp upstream
Tssr25660	transcription start site region 25660	344 bp upstream
Tssr25661	transcription start site region 25661	323 bp upstream
Tssr25662	transcription start site region 25662	220 bp upstream
Tssr25663	transcription start site region 25663	194 bp upstream
Tssr25664	transcription start site region 25664	153 bp upstream
Tssr25665	transcription start site region 25665	45 bp upstream
Tssr25666	transcription start site region 25666	491 bp downstream
Tssr25667	transcription start site region 25667	518 bp downstream
Tssr25668	transcription start site region 25668	554 bp downstream
Tssr25669	transcription start site region 25669	583 bp downstream
Tssr25670	transcription start site region 25670	1539 bp downstream
Tssr25671	transcription start site region 25671	1582 bp downstream
Tssr25672	transcription start site region 25672	1651 bp downstream
Tssr25673	transcription start site region 25673	1686 bp downstream
Tssr25674	transcription start site region 25674	1890 bp downstream
Tssr25675	transcription start site region 25675	1938 bp downstream
Tssr25676	transcription start site region 25676	1975 bp downstream