rs28306383 SNP Detail

Summary

• ID
  rs28306383
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113878085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGATTCCA AGAAGCACAA
  TACGGTCATC CTGAATATAA GGTAGGCTAA GAGAGAGACA TCTCAGAAGC ACTTGCGGTG
  GACAATGGAT GGGCCTGCCT CATCATACTC TTGCTTGCTG ATCCACATTT GCTGGAAGGT
  GGACAGAGAG GCCAGGATGG AGCCCCCAAT CCAGACAGAG TATTTACGCT CAGGGGGAGC
  R
  ATAATCTGCA GAGAGAAAAC AAAACCATCA GTGTGTTCTG AAGTCCCCAA CAATGAAGTG
  GGCAACAGGC TTGGAATATT CACAGAAAAA CCATCACAGA TTAACCGATA GTAGACAACG
  TAGGAGATGC TATACAATAA GCAATGTAGC CAATCAGGCT TTGCAATCCT TCCTGTATTT
  CATCATTTCT CTGCTTATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667320	NES09035377	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28306383					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667320	NES09035377	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113878085 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Rr562815	regulatory region 562815	1894 bp distal
Rr562816	regulatory region 562816	within coordinates
Tssr600	transcription start site region 600	35 bp upstream
Tssr601	transcription start site region 601	24 bp upstream
Tssr19429	transcription start site region 19429	307 bp downstream
Tssr19430	transcription start site region 19430	197 bp downstream
Tssr19431	transcription start site region 19431	113 bp downstream
Tssr19432	transcription start site region 19432	30 bp downstream
Tssr19433	transcription start site region 19433	517 bp upstream
Tssr19434	transcription start site region 19434	570 bp upstream
Tssr19435	transcription start site region 19435	1565 bp upstream
Tssr19436	transcription start site region 19436	1946 bp upstream
Tssr25660	transcription start site region 25660	286 bp upstream
Tssr25661	transcription start site region 25661	265 bp upstream
Tssr25662	transcription start site region 25662	162 bp upstream
Tssr25663	transcription start site region 25663	136 bp upstream
Tssr25664	transcription start site region 25664	95 bp upstream
Tssr25665	transcription start site region 25665	within coordinates
Tssr25666	transcription start site region 25666	549 bp downstream
Tssr25667	transcription start site region 25667	576 bp downstream
Tssr25668	transcription start site region 25668	612 bp downstream
Tssr25669	transcription start site region 25669	641 bp downstream
Tssr25670	transcription start site region 25670	1597 bp downstream
Tssr25671	transcription start site region 25671	1640 bp downstream
Tssr25672	transcription start site region 25672	1709 bp downstream
Tssr25673	transcription start site region 25673	1744 bp downstream
Tssr25674	transcription start site region 25674	1948 bp downstream
Tssr25675	transcription start site region 25675	1996 bp downstream