rs28306385 SNP Detail

Summary

• ID
  rs28306385
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113877920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCTCCAT CCCAGGCCCA
  CTCACACAAG AAAGAACACA GGCTTTTGTA GGTTGCAAGT CCTGGTCTGG TTTATTTATA
  AAGCAATAAA TATTTGAAGC ACAAACAAAC TGCACTTGTG TAAACAAACT GTACAATGAC
  TGATGAGAGA TGGGGAGGGG GCTCAGAGGA TTCCAAGAAG CACAATACGG TCATCCTGAA
  Y
  ATAAGGTAGG CTAAGAGAGA GACATCTCAG AAGCACTTGC GGTGGACAAT GGATGGGCCT
  GCCTCATCAT ACTCTTGCTT GCTGATCCAC ATTTGCTGGA AGGTGGACAG AGAGGCCAGG
  ATGGAGCCCC CAATCCAGAC AGAGTATTTA CGCTCAGGGG GAGCAATAAT CTGCAGAGAG
  AAAACAAAAC CATCAGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667322	NES09035374	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28306385					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667322	NES09035374	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113877920 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Rr562815	regulatory region 562815	1729 bp distal
Rr562816	regulatory region 562816	within coordinates
Tssr600	transcription start site region 600	123 bp downstream
Tssr601	transcription start site region 601	133 bp downstream
Tssr19429	transcription start site region 19429	142 bp downstream
Tssr19430	transcription start site region 19430	32 bp downstream
Tssr19431	transcription start site region 19431	20 bp upstream
Tssr19432	transcription start site region 19432	116 bp upstream
Tssr19433	transcription start site region 19433	682 bp upstream
Tssr19434	transcription start site region 19434	735 bp upstream
Tssr19435	transcription start site region 19435	1730 bp upstream
Tssr25660	transcription start site region 25660	121 bp upstream
Tssr25661	transcription start site region 25661	100 bp upstream
Tssr25662	transcription start site region 25662	within coordinates
Tssr25663	transcription start site region 25663	9 bp downstream
Tssr25664	transcription start site region 25664	39 bp downstream
Tssr25665	transcription start site region 25665	147 bp downstream
Tssr25666	transcription start site region 25666	714 bp downstream
Tssr25667	transcription start site region 25667	741 bp downstream
Tssr25668	transcription start site region 25668	777 bp downstream
Tssr25669	transcription start site region 25669	806 bp downstream
Tssr25670	transcription start site region 25670	1762 bp downstream
Tssr25671	transcription start site region 25671	1805 bp downstream
Tssr25672	transcription start site region 25672	1874 bp downstream
Tssr25673	transcription start site region 25673	1909 bp downstream