rs28306386 SNP Detail

Summary

• ID
  rs28306386
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:113877912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGAAGCAC AAACAAACTG CACTTGTGTA AACAAACTGT
  ACAATGACTG ATGAGAGATG GGGAGGGGGC TCAGAGGATT CCAAGAAGCA CAATACGGTC
  R
  TCCTGAATAT AAGGTAGGCT AAGAGAGAGA CATCTCAGAA GCACTTGCGG TGGACAATGG
  ATGGGCCTGC CTCATCATAC TCTTGCTTGC TGATCCACAT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667323	NES09035372	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28306386					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667323	NES09035372	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113877912 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	mRNA-UTR
Rr562815	regulatory region 562815	1721 bp distal
Rr562816	regulatory region 562816	within coordinates
Tssr600	transcription start site region 600	131 bp downstream
Tssr601	transcription start site region 601	141 bp downstream
Tssr19429	transcription start site region 19429	134 bp downstream
Tssr19430	transcription start site region 19430	24 bp downstream
Tssr19431	transcription start site region 19431	28 bp upstream
Tssr19432	transcription start site region 19432	124 bp upstream
Tssr19433	transcription start site region 19433	690 bp upstream
Tssr19434	transcription start site region 19434	743 bp upstream
Tssr19435	transcription start site region 19435	1738 bp upstream
Tssr25660	transcription start site region 25660	113 bp upstream
Tssr25661	transcription start site region 25661	92 bp upstream
Tssr25662	transcription start site region 25662	within coordinates
Tssr25663	transcription start site region 25663	17 bp downstream
Tssr25664	transcription start site region 25664	47 bp downstream
Tssr25665	transcription start site region 25665	155 bp downstream
Tssr25666	transcription start site region 25666	722 bp downstream
Tssr25667	transcription start site region 25667	749 bp downstream
Tssr25668	transcription start site region 25668	785 bp downstream
Tssr25669	transcription start site region 25669	814 bp downstream
Tssr25670	transcription start site region 25670	1770 bp downstream
Tssr25671	transcription start site region 25671	1813 bp downstream
Tssr25672	transcription start site region 25672	1882 bp downstream
Tssr25673	transcription start site region 25673	1917 bp downstream