rs28306387 SNP Detail

Summary

• ID
  rs28306387
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113877756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACCACAG AACTAATCTT
  TGCTTATAAG ATTCAAAAAT ATTCATAACT CCATCCCAAA AGATGTACCT CTGTAACTCC
  TAGCTCAATT CAACACCACA TGAATTCATT GGGTAAACTT TGTGTTGCAC TAATATTGTA
  ATGCTCGGAG TATCAGAGTG AACACCTTCT CCATCCCAGG CCCACTCACA CAAGAAAGAA
  S
  ACAGGCTTTT GTAGGTTGCA AGTCCTGGTC TGGTTTATTT ATAAAGCAAT AAATATTTGA
  AGCACAAACA AACTGCACTT GTGTAAACAA ACTGTACAAT GACTGATGAG AGATGGGGAG
  GGGGCTCAGA GGATTCCAAG AAGCACAATA CGGTCATCCT GAATATAAGG TAGGCTAAGA
  GAGAGACATC TCAGAAGCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667324	NES09035370	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28306387					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667324	NES09035370	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113877756 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	7 bp downstream
Rr562815	regulatory region 562815	1565 bp distal
Rr562816	regulatory region 562816	within coordinates
Tssr600	transcription start site region 600	287 bp downstream
Tssr601	transcription start site region 601	297 bp downstream
Tssr19429	transcription start site region 19429	9 bp upstream
Tssr19430	transcription start site region 19430	104 bp upstream
Tssr19431	transcription start site region 19431	184 bp upstream
Tssr19432	transcription start site region 19432	280 bp upstream
Tssr19433	transcription start site region 19433	846 bp upstream
Tssr19434	transcription start site region 19434	899 bp upstream
Tssr19435	transcription start site region 19435	1894 bp upstream
Tssr25660	transcription start site region 25660	36 bp downstream
Tssr25661	transcription start site region 25661	53 bp downstream
Tssr25662	transcription start site region 25662	110 bp downstream
Tssr25663	transcription start site region 25663	173 bp downstream
Tssr25664	transcription start site region 25664	203 bp downstream
Tssr25665	transcription start site region 25665	311 bp downstream
Tssr25666	transcription start site region 25666	878 bp downstream
Tssr25667	transcription start site region 25667	905 bp downstream
Tssr25668	transcription start site region 25668	941 bp downstream
Tssr25669	transcription start site region 25669	970 bp downstream
Tssr25670	transcription start site region 25670	1926 bp downstream
Tssr25671	transcription start site region 25671	1969 bp downstream