rs28306389 SNP Detail

Summary

• ID
  rs28306389
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113877715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCTTCAT TCCTTACTTA
  TACAGAACTA AACCTAACAA CTAAACCACA GAACTAATCT TTGCTTATAA GATTCAAAAA
  TATTCATAAC TCCATCCCAA AAGATGTACC TCTGTAACTC CTAGCTCAAT TCAACACCAC
  ATGAATTCAT TGGGTAAACT TTGTGTTGCA CTAATATTGT AATGCTCGGA GTATCAGAGT
  R
  AACACCTTCT CCATCCCAGG CCCACTCACA CAAGAAAGAA CACAGGCTTT TGTAGGTTGC
  AAGTCCTGGT CTGGTTTATT TATAAAGCAA TAAATATTTG AAGCACAAAC AAACTGCACT
  TGTGTAAACA AACTGTACAA TGACTGATGA GAGATGGGGA GGGGGCTCAG AGGATTCCAA
  GAAGCACAAT ACGGTCATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37667326	NES09035367	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28306389					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667326	NES09035367	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113877715 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	48 bp downstream
Rr562815	regulatory region 562815	1524 bp distal
Rr562816	regulatory region 562816	within coordinates
Tssr600	transcription start site region 600	328 bp downstream
Tssr601	transcription start site region 601	338 bp downstream
Tssr19429	transcription start site region 19429	50 bp upstream
Tssr19430	transcription start site region 19430	145 bp upstream
Tssr19431	transcription start site region 19431	225 bp upstream
Tssr19432	transcription start site region 19432	321 bp upstream
Tssr19433	transcription start site region 19433	887 bp upstream
Tssr19434	transcription start site region 19434	940 bp upstream
Tssr19435	transcription start site region 19435	1935 bp upstream
Tssr25660	transcription start site region 25660	77 bp downstream
Tssr25661	transcription start site region 25661	94 bp downstream
Tssr25662	transcription start site region 25662	151 bp downstream
Tssr25663	transcription start site region 25663	214 bp downstream
Tssr25664	transcription start site region 25664	244 bp downstream
Tssr25665	transcription start site region 25665	352 bp downstream
Tssr25666	transcription start site region 25666	919 bp downstream
Tssr25667	transcription start site region 25667	946 bp downstream
Tssr25668	transcription start site region 25668	982 bp downstream
Tssr25669	transcription start site region 25669	1011 bp downstream
Tssr25670	transcription start site region 25670	1967 bp downstream