rs28306390 SNP Detail

Summary

• ID
  rs28306390
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113877702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTT GCACTAATAT TGTAATGCTC
  R
  GAGTATCAGA GTGAACACCT TCTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37667327	NES09035365	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	G		G	A	A	A		A	A	A	A		G
ss45251088	mCV22515919	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					G		A
ss147245751	ENSMUSSNP1237044	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
ss320462296	CHEV_2_113872957	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28306390					SNP	G	G	A	A	A	A	G	G	G	A	A	A	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667327	NES09035365	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113877702 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	61 bp downstream
Rr562815	regulatory region 562815	1511 bp distal
Rr562816	regulatory region 562816	within coordinates
Tssr600	transcription start site region 600	341 bp downstream
Tssr601	transcription start site region 601	351 bp downstream
Tssr19429	transcription start site region 19429	63 bp upstream
Tssr19430	transcription start site region 19430	158 bp upstream
Tssr19431	transcription start site region 19431	238 bp upstream
Tssr19432	transcription start site region 19432	334 bp upstream
Tssr19433	transcription start site region 19433	900 bp upstream
Tssr19434	transcription start site region 19434	953 bp upstream
Tssr19435	transcription start site region 19435	1948 bp upstream
Tssr25660	transcription start site region 25660	90 bp downstream
Tssr25661	transcription start site region 25661	107 bp downstream
Tssr25662	transcription start site region 25662	164 bp downstream
Tssr25663	transcription start site region 25663	227 bp downstream
Tssr25664	transcription start site region 25664	257 bp downstream
Tssr25665	transcription start site region 25665	365 bp downstream
Tssr25666	transcription start site region 25666	932 bp downstream
Tssr25667	transcription start site region 25667	959 bp downstream
Tssr25668	transcription start site region 25668	995 bp downstream
Tssr25669	transcription start site region 25669	1024 bp downstream
Tssr25670	transcription start site region 25670	1980 bp downstream