rs28306391 SNP Detail

Summary

• ID
  rs28306391
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113877636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGTTATA AAATATGTGA
  TATGTGCTAA AGCAACTTTA GTACCAAACA TGGCAACTGG TTGTAGATAA TTGTGTTTTC
  TATCTTCATT CCTTACTTAT ACAGAACTAA ACCTAACAAC TAAACCACAG AACTAATCTT
  TGCTTATAAG ATTCAAAAAT ATTCATAACT CCATCCCAAA AGATGTACCT CTGTAACTCC
  Y
  AGCTCAATTC AACACCACAT GAATTCATTG GGTAAACTTT GTGTTGCACT AATATTGTAA
  TGCTCGGAGT ATCAGAGTGA ACACCTTCTC CATCCCAGGC CCACTCACAC AAGAAAGAAC
  ACAGGCTTTT GTAGGTTGCA AGTCCTGGTC TGGTTTATTT ATAAAGCAAT AAATATTTGA
  AGCACAAACA AACTGCACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667328	NES09035364	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28306391					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667328	NES09035364	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113877636 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	127 bp downstream
Rr562815	regulatory region 562815	1445 bp distal
Rr562816	regulatory region 562816	within coordinates
Tssr600	transcription start site region 600	407 bp downstream
Tssr601	transcription start site region 601	417 bp downstream
Tssr19429	transcription start site region 19429	129 bp upstream
Tssr19430	transcription start site region 19430	224 bp upstream
Tssr19431	transcription start site region 19431	304 bp upstream
Tssr19432	transcription start site region 19432	400 bp upstream
Tssr19433	transcription start site region 19433	966 bp upstream
Tssr19434	transcription start site region 19434	1019 bp upstream
Tssr25660	transcription start site region 25660	156 bp downstream
Tssr25661	transcription start site region 25661	173 bp downstream
Tssr25662	transcription start site region 25662	230 bp downstream
Tssr25663	transcription start site region 25663	293 bp downstream
Tssr25664	transcription start site region 25664	323 bp downstream
Tssr25665	transcription start site region 25665	431 bp downstream
Tssr25666	transcription start site region 25666	998 bp downstream
Tssr25667	transcription start site region 25667	1025 bp downstream
Tssr25668	transcription start site region 25668	1061 bp downstream
Tssr25669	transcription start site region 25669	1090 bp downstream