rs28306396 SNP Detail

Summary

• ID
  rs28306396
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113877050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATACACG CATGTACTCA
  AAACCAGTGT TGCAGTGAAG TCATGTGATA CAACACAGGC AATAACCATC GCAAACACCT
  TGTATTAATT TTACATTTGA TTTGGAATTC AATTTTGGTC ATAGTGAATT CATGAGCCAT
  ATAATGTTTT TTGTTTTGTT TTGTTTAAAA AAAAAAACTG ATGGTTACCA GTATATATGC
  R
  GTATGACAAG TCAACACCTG GCAAGTCAAC CTTCTCATTG CTTTCATTGG CTTCGAGTCA
  CACTACAGGC TGGAGAGCTG TCTCAGTGGC TAATATCCTT AATATCCCTA TAGATGAACC
  TGGTTTGATT CCTAGCACCT ATATGGTGGC TCAAAACCAT CCAGTTCTAG CAGATCGTAT
  ACCCTCTTCT TACTGTAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667333	NES09035415	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28306396					SNP	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667333	NES09035415	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113877050 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	713 bp downstream
Rr562815	regulatory region 562815	859 bp distal
Rr562816	regulatory region 562816	within coordinates
Tssr600	transcription start site region 600	993 bp downstream
Tssr601	transcription start site region 601	1003 bp downstream
Tssr19429	transcription start site region 19429	715 bp upstream
Tssr19430	transcription start site region 19430	810 bp upstream
Tssr19431	transcription start site region 19431	890 bp upstream
Tssr19432	transcription start site region 19432	986 bp upstream
Tssr19433	transcription start site region 19433	1552 bp upstream
Tssr19434	transcription start site region 19434	1605 bp upstream
Tssr25660	transcription start site region 25660	742 bp downstream
Tssr25661	transcription start site region 25661	759 bp downstream
Tssr25662	transcription start site region 25662	816 bp downstream
Tssr25663	transcription start site region 25663	879 bp downstream
Tssr25664	transcription start site region 25664	909 bp downstream
Tssr25665	transcription start site region 25665	1017 bp downstream
Tssr25666	transcription start site region 25666	1584 bp downstream
Tssr25667	transcription start site region 25667	1611 bp downstream
Tssr25668	transcription start site region 25668	1647 bp downstream
Tssr25669	transcription start site region 25669	1676 bp downstream