rs28306397 SNP Detail

Summary

• ID
  rs28306397
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113876142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCT ATTTTGAACA TACTCATGCT
  Y
  AGTGTTCCTA AATCTGTCCA GGAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667334	NES09035427	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28306397					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667334	NES09035427	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113876142 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	1621 bp downstream
Rr562815	regulatory region 562815	within coordinates
Rr562816	regulatory region 562816	544 bp proximal
Tssr600	transcription start site region 600	1901 bp downstream
Tssr601	transcription start site region 601	1911 bp downstream
Tssr19429	transcription start site region 19429	1623 bp upstream
Tssr19430	transcription start site region 19430	1718 bp upstream
Tssr19431	transcription start site region 19431	1798 bp upstream
Tssr19432	transcription start site region 19432	1894 bp upstream
Tssr25660	transcription start site region 25660	1650 bp downstream
Tssr25661	transcription start site region 25661	1667 bp downstream
Tssr25662	transcription start site region 25662	1724 bp downstream
Tssr25663	transcription start site region 25663	1787 bp downstream
Tssr25664	transcription start site region 25664	1817 bp downstream
Tssr25665	transcription start site region 25665	1925 bp downstream