rs28308253 SNP Detail

Summary

• ID
  rs28308253
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:73129431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAC CCAAGACCGG TGGCAGTCCC
  R
  GCCGTCAGCT AACACCTCCG TTAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37159488	NES08475950	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	G		G	A	A	G		A	G	A	A		A
ss38705023	mCV25414410	ABI	CRAMUS_MOUSE	f	SNP	G	A					A		A
ss132423061	ENSMUSSNP908308	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss323746064	CHEV_11_73052107	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28308253					SNP	G	A	G	G	G	G	A	G	A	A	G	G	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37159488	NES08475950	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:73129431 () rs orientation: forward

Symbol	Name	Function Class
Rr236157	regulatory region 236157	1031 bp distal
Rr251456	regulatory region 251456	832 bp distal
Trpv1	transient receptor potential cation channel, subfamily V, member 1	within coordinates