rs28308321 SNP Detail

Summary

• ID
  rs28308321
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99242742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCTGTGT TGCTAGGCAG
  GGCATCCAGG GGGATTGGTT AGCCTTTGTG ACTCTCAGTT TCTTTAGCTA TAAATGAAGG
  ATCTAGGTTA TGGCCAGGGG ACAAGTAGGT TTATAGTATT TCCATAGATC TTCTTTTTCT
  TAGACTACTT CTGCCCTTGC TTCCTCTACT TCTTACCTCT TACTTCTTCC TAAACTGGTT
  M
  TATTATCTTA GAGATTTTGG GTTTACTGCC CCTCCTTTCC CTCTCCTCTC TCCTTCCCTC
  CTCTTCTCTT CCCTTCTTCC ATTTGACAGG GTCTCACTAT CTTGCCCAGG CTGGCCTCAA
  TCTTGTGGTC CTTCTGCCTC CGGCTCTGGA GTGCCAGGAT TGTAGGTATG GTCCCCAGCG
  CCTGCTCAAC CACTGTTTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37288463	NES08565525	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs28308321					SNP	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37288463	NES08565525	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99242742 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3794	CpG island 3794	792 bp distal
Krt27	keratin 27	812 bp upstream
Tssr110649	transcription start site region 110649	1897 bp upstream
Tssr110650	transcription start site region 110650	803 bp upstream