rs28308386 SNP Detail

Summary

• ID
  rs28308386
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:7096589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGACATTA TAAACAATGT
  GGTAACGGTA TTTTATCTTG TTACCAAGAA TTGCGTGATT GCCCCAATCT ATAGAGAACT
  GCCAGTATAA GAAGGGGAGG TGCTCATTAA AACACATCAA TTTTCCATTC TATCTATCTA
  TCTATCTATC TATCTATCTA TCTATCTATC TATCTATCCA TCAATCTATC TGTCTGCATG
  Y
  CTGTTCATCT GTCTATCCAT CCATCCATCC GTCCATCCAT CCATCCATCC ATCCATCCAG
  GCATCCATCC ATCCATCCAT CCATCCATCC ATCCATCCAT CCATCCATAC CTCCAGACCT
  CCACATCCAT CTACCTGCCT GTCTGTCTAT CTCTCTGTCT ATCTACCTTA CTGGAAGCAG
  CTTTATTGGT TCAGCAGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37316224	NES08826058	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	T	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28308386					SNP	C	C	C	C	T	C	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37316224	NES08826058	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:7096589 () rs orientation: forward

Symbol	Name	Function Class
Celf2	CUGBP, Elav-like family member 2	Intron
Rr551491	regulatory region 551491	1816 bp distal
Rr551492	regulatory region 551492	914 bp proximal