rs28311842 SNP Detail

Summary

• ID
  rs28311842
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:17659680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGGTGTTT CCATGATGGA
  TTAACCTAAG CAACTTTTAT TTTGCCTCTT ATTCGGTGTC ATCCACACCC AAATTTTATT
  TTATATTAAT GGACCCAGAT ATAATTTGCC TTTGCAACAC AGAAATATGT ATTCAAATTT
  TCAAATTACA GTGAAATTTT TAGGATAACT CTGAATATAC ATACTTTATC CTACAATTTA
  R
  GCTACTTAAA GACTCAAGTG TATATTTTAT AATTAATGTG ATAATATTAC TTCTATTGTG
  AAAGCAAATA GTTTCTATTA AAGGATCATA TTGACTATCT CAGTGATATA TTTTTAAGCA
  ATAATGAATA TATCTATTCT CATAAGAAAG TTGACATTGA GAAATTAACT TGTTTAATAG
  TAAAACACCT GTGGAGATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37883372	NES08628434	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28311842					SNP	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37883372	NES08628434	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:17659680 () rs orientation: forward

Symbol	Name	Function Class
Gm11851	predicted gene 11851	1717 bp upstream