rs28311847 SNP Detail

Summary

• ID
  rs28311847
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:17658450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTATGGAT TATTTTTATT
  TGTTGTGGTA ATTTACATAT ATTTAATTAT GTAGAATTGT TACTGATGCT TTACTTTTTC
  TGATGGTGCC ATGCTTTCTG ATACTGTTTT AATCCTTATG TACTTTTGTG GCATATGTAC
  AGTTTAGCAT GGAACTCAAT ACATCTCCCT GTCTTTATAT AACAGCTTTA GTAGAGAATG
  Y
  CATTCATTAT TTGCTCAAAC AAAATTCTGG ACAATATGGA AGGCAGTGAC TAACAGTCTC
  CAAGTTGCTT CTGGAATTAG TGAGCTAATA TTTTCAGAAT CACTAAAACT GTCCTGAACG
  TCAAAGTATT TATAGATATT GAGCCTGCTG CCTACCCAGT GACACAAAGA CAGGACAGAA
  GCTCAAATTA ACCTGTAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37883377	NES08723863	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28311847					SNP	T	T	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37883377	NES08723863	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:17658450 () rs orientation: forward

Symbol	Name	Function Class
Gm11851	predicted gene 11851	487 bp upstream