rs28311851 SNP Detail

Summary

• ID
  rs28311851
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:17654686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGAGTGAG CATATTTTGC
  CAGATAGTAC TCTTTAGTTC ATTTAGGATT TCATCATTCA TTTGGTATTG TTCATCTATT
  TACCTGAGTA ATATCAATAG CTTGTCCTCA ATTTATATGA CTCTTTGTAG ACTGAGCCTG
  CTTCTGAATC TCTTTCTGTT TGTCTTCATT TTTCTTTTTC CGATTATGGT CAGTTTTTGG
  W
  TTTGTATCCC TAATAACTCA ATGTGATCCT TTACAAGTAA TGCACTTGAC ATTCTGGTAT
  GGACCTAACG TCTCAGTCGT TGGAAAGCTG AAGCAAGATC ATGAACTTAA GGTCAACTTG
  GACTACATAA TGAGTTTATT ATCAGTGTAG GCTATACAGT ATCTGAGTCA CAAAACAAAC
  AAATAAAAGA ACATGGTATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37883381	NES08628482	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28311851					SNP	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37883381	NES08628482	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:17654686 () rs orientation: forward

Symbol	Name	Function Class
Gm11851	predicted gene 11851	1989 bp downstream