rs28314169 SNP Detail

Summary

• ID
  rs28314169
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174125728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCA TTAACACTCA TTCACGTACG
  K
  ATCCTCATTC CCCTGAATAT TTACA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37830337	NES08714910	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	G	T	G		G	T	G		G
ss320627355	CHEV_2_174109436	CHEVERUD	SCREENING_POP	f	SNP									G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs28314169					SNP	G	G	T	G	G	G	T	G	G	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37830337	NES08714910	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174125728 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12855	CpG island 12855	158 bp proximal
Gnas	GNAS complex locus	385 bp upstream
Gnasas1	GNAS antisense RNA 1	within coordinates
Rr41274	regulatory region 41274	73 bp proximal
Rr56204	regulatory region 56204	within coordinates
Tssr789	transcription start site region 789	293 bp upstream
Tssr790	transcription start site region 790	333 bp upstream
Tssr22087	transcription start site region 22087	377 bp upstream
Tssr22088	transcription start site region 22088	675 bp upstream
Tssr22089	transcription start site region 22089	1338 bp upstream
Tssr22090	transcription start site region 22090	1362 bp upstream
Tssr22091	transcription start site region 22091	1417 bp upstream
Tssr28006	transcription start site region 28006	1229 bp downstream