rs28314172 SNP Detail

Summary

• ID
  rs28314172
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174124819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTGTGAC ACTGCATCTG
  GGAGCCTGAC TCTGAGGTGC AAGTGTGTGA GGGTAAGTAA GTGACCTAGG ACCAGCACCT
  GCTTCAAGAC ATAACTCACA ATTCCACCTC CAGGAAGGAA CCCTGGGGGA GCAGCTTGGA
  GAGGCAGCAG TACCTCTTGT GACTCTTCAC ATGGACTCAA GGGAAAAACA AAAAACCAAA
  Y
  AGCCCACCGT GTGACATGTG TTCCATGTAA AAAACAAATC AAAAAAACCT CAAAACCAAA
  AACCCAACAA CTAAAACACC CTGCCAAGAC TTCATGCATC CCTATAACAC AACTCTGCTA
  GTGTTATGCT TTTTTTTTTT TAAGGTACTC TATATTTAAC AAGGCAAAAG GCAAGATAAA
  CGAGCCCCAC ACCCACTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37830340	NES08700404	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28314172					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37830340	NES08700404	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174124819 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12855	CpG island 12855	1067 bp proximal
Gnas	GNAS complex locus	1294 bp upstream
Gnasas1	GNAS antisense RNA 1	within coordinates
Rr41274	regulatory region 41274	982 bp proximal
Rr56204	regulatory region 56204	381 bp proximal
Tssr789	transcription start site region 789	1202 bp upstream
Tssr790	transcription start site region 790	1242 bp upstream
Tssr22087	transcription start site region 22087	1286 bp upstream
Tssr22088	transcription start site region 22088	1584 bp upstream