rs28314173 SNP Detail

Summary

• ID
  rs28314173
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174124768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGACAGAG AGATTCTATA
  ATCTCCAACC ATGCAGGGCA CCTAGGACCT AAGTCTGTGA CACTGCATCT GGGAGCCTGA
  CTCTGAGGTG CAAGTGTGTG AGGGTAAGTA AGTGACCTAG GACCAGCACC TGCTTCAAGA
  CATAACTCAC AATTCCACCT CCAGGAAGGA ACCCTGGGGG AGCAGCTTGG AGAGGCAGCA
  R
  TACCTCTTGT GACTCTTCAC ATGGACTCAA GGGAAAAACA AAAAACCAAA CAGCCCACCG
  TGTGACATGT GTTCCATGTA AAAAACAAAT CAAAAAAACC TCAAAACCAA AAACCCAACA
  ACTAAAACAC CCTGCCAAGA CTTCATGCAT CCCTATAACA CAACTCTGCT AGTGTTATGC
  TTTTTTTTTT TTAAGGTACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37830341	NES08700403	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28314173					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37830341	NES08700403	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174124768 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12855	CpG island 12855	1118 bp proximal
Gnas	GNAS complex locus	1345 bp upstream
Gnasas1	GNAS antisense RNA 1	within coordinates
Tssr789	transcription start site region 789	1253 bp upstream
Tssr790	transcription start site region 790	1293 bp upstream
Tssr22087	transcription start site region 22087	1337 bp upstream
Tssr22088	transcription start site region 22088	1635 bp upstream