rs28314174 SNP Detail

Summary

• ID
  rs28314174
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174124709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACCAGCA TTTAAGGCTG
  TACATGAACT CCTAGACCAC AAGATGCAGC ACCAACAGTC AAGACAGAGA GATTCTATAA
  TCTCCAACCA TGCAGGGCAC CTAGGACCTA AGTCTGTGAC ACTGCATCTG GGAGCCTGAC
  TCTGAGGTGC AAGTGTGTGA GGGTAAGTAA GTGACCTAGG ACCAGCACCT GCTTCAAGAC
  R
  TAACTCACAA TTCCACCTCC AGGAAGGAAC CCTGGGGGAG CAGCTTGGAG AGGCAGCAGT
  ACCTCTTGTG ACTCTTCACA TGGACTCAAG GGAAAAACAA AAAACCAAAC AGCCCACCGT
  GTGACATGTG TTCCATGTAA AAAACAAATC AAAAAAACCT CAAAACCAAA AACCCAACAA
  CTAAAACACC CTGCCAAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37830342	NES08700402	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28314174					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37830342	NES08700402	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174124709 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12855	CpG island 12855	1177 bp proximal
Gnas	GNAS complex locus	1404 bp upstream
Gnasas1	GNAS antisense RNA 1	within coordinates
Rr41274	regulatory region 41274	1092 bp proximal
Rr56204	regulatory region 56204	491 bp proximal
Tssr789	transcription start site region 789	1312 bp upstream
Tssr790	transcription start site region 790	1352 bp upstream
Tssr22087	transcription start site region 22087	1396 bp upstream
Tssr22088	transcription start site region 22088	1694 bp upstream