rs28315874 SNP Detail

Summary

• ID
  rs28315874
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:80007837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAAAGAAA GTGCTGAGAT
  GCAAAGAAGA ATAGGAAGTT AATGAGAAAA TTGGGTCAAG ATTCTCATTA AGCGATTGTA
  GAATCTTATT AAATTCTTCA ACCTCCGACT GTCTGATTAG AAAGAGAGGA ATCACAAACT
  GCAGCTTGGA AAGCTGCCCA GTGCTACTCC CCTTGTGGCT GGAAGAGCAT CCCTAGACAC
  M
  GTTAAAAGAA TGTCAAAAGC TACAGAGAAG ATCACAGGGA TGCTGGAGGC AAAAATCACT
  TCGGGTGGAA TCCTTACTCC AGCATCAATT ACCCCTGTGA CTTTGGACAA TTGGTTCAAC
  TTCCTCCCAT TTACTATGGA AGACAACACT ACCCACCTGT TGGCCTGTTG TAAATCCTGG
  GATAGGTATT GTGTTGCAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38182900	NES09239440	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28315874					SNP	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38182900	NES09239440	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:80007837 () rs orientation: forward

Symbol	Name	Function Class
D2Mit94	DNA segment, Chr 2, Massachusetts Institute of Technology 94	1724 bp distal
Gm75126	predicted gene, 75126	within coordinates
Rr560065	regulatory region 560065	758 bp proximal