rs28315880 SNP Detail

Summary

• ID
  rs28315880
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:80006752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTTGTCTG AAACATCTGG GTTTCCTTTC TTCATTCAAA
  GATGGTAGAA CAATGTCTTT CTCAAACAAC ATTCCATGAG ATGCAATCAC CCCGGGTATC
  W
  TGCTCTGGGT TATATATAAT ACTGTTCATA TGTCATGATG ATCCAAGGTT ACTCTTCATA
  CAGGTAAGGG AAGTTGGCAG ACAAGGAACT TGGGATTCT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38182906	NES09239470	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T		T	T	A	T		T		T	T	T		T
ss45353286	mCV25098035	ABI	CRAMUS_MOUSE	f	SNP	T	T	T				A		T
ss146790348	ENSMUSSNP2150252	ENSEMBL	ENSEMBL_Sanger	f	SNP			T						T					T
ss320362145	CHEV_2_80016565	CHEVERUD	SCREENING_POP	f	SNP												T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28315880					SNP	T	T	T	T	T	T	A	T	T	A	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38182906	NES09239470	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:80006752 () rs orientation: forward

Symbol	Name	Function Class
D2Mit94	DNA segment, Chr 2, Massachusetts Institute of Technology 94	639 bp distal
Gm75126	predicted gene, 75126	within coordinates
Rr560065	regulatory region 560065	1843 bp proximal