rs28315884 SNP Detail

Summary

• ID
  rs28315884
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:80004425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGAAAGTA ATCCACTCCT CTGAGACCTA GCTCACTCCT
  CTATGGTACT CTCATTGATT CTTTCTCAAA GGTGGTCTGA CTCAGCCACA ACCCAGTGAG
  W
  CCGACCACCT CTTAACAGTT CTATAATGGC ATTATATTAT GGACCAACCT TATAGTACAG
  GAAACTTTGG AGAATGAAGA CTGTTCCAGA CTTTGAAGT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38182910	NES09239512	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	T		A	T	A	T		A	T	A	A		T
ss45277596	mCV25098011	ABI	CRAMUS_MOUSE	f	SNP		A	T				A		T
ss146790324	ENSMUSSNP3315730	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T						T
ss320362144	CHEV_2_80014238	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28315884					SNP	A	A	T	T	T	T	A	A	T	A	T	T	A	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38182910	NES09239512	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:80004425 () rs orientation: forward

Symbol	Name	Function Class
D2Mit94	DNA segment, Chr 2, Massachusetts Institute of Technology 94	1529 bp proximal
Gm75126	predicted gene, 75126	within coordinates