rs28318042 SNP Detail

Summary

• ID
  rs28318042
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98727160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGTGTTA GTCTGCGTAC
  TCTAATAAAA TACCCGAAGA AGGCTAATTA AGTAAAGAAA AGAAGTGTAT GCATTTCAGG
  GGTCTGGAGG CCCAGGGCAA TGCCCTTGGC ATCAGCTTGG CTCAGTAAGG TCCTTTGCTG
  ATGATGTAAC CATAGCAGAG ACATGCACAC AAAGAAAAGG TTAAAGAGCA GGACAAGAAG
  Y
  CAATGATGCT AAGGAGTAGC CACACTAGTA TATTTATTAC AGTGACCGTA ACAGTTAACT
  GGGGGCTCCC ATGAACACCA ACTACATTCC CTCTACTTAC CGCTTACTGG CTTGCTTCCC
  CTAGCTTACT CAGTCTGCTT CCTTATAGAA CCCAGACCGC CAGCCCAGGG ATAGCACCAC
  CCACCAGGGG CTGTACAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38241969	NES09554985	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28318042					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38241969	NES09554985	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98727160 () rs orientation: forward

Symbol	Name	Function Class
Rr376900	regulatory region 376900	1457 bp upstream
Rr595796	regulatory region 595796	87 bp proximal
Rr595797	regulatory region 595797	1423 bp proximal