rs28318051 SNP Detail

Summary

• ID
  rs28318051
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98726645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGGCTCC TTTCCCTCTC
  TACATGGACC CAACTCCTTT CGGGCACACC CAGGGCAGCT GTACTGCAGG GTCCTAGGAC
  TGCCTTGTCT GCCCAGCCTT GCACTGGCTC CTCCTTGCCC AGCTTCCGCT GCCATACAGT
  GTGGGGTTGC CCTTCGTGGA GCACCTAAGG GACACCTCCT CTGGCCTATG GATGTTGGTC
  Y
  AAAGAGTTCG TCACATCTCG CCTCCTGGAT CTTCTCTAGT TCTACTTGTC CGATAATGGT
  CTCATCGATC TCCCAGATCT TATTCATCCA CTATCCAGAG CATTGCCCAA TCTTACCCTC
  TCCATTTCTT ACTCCCTTTA TCGCCCCCCC CCCCCCCAGT GGTGACTCCC AGCAAGAGGA
  AAAAAAAAAA AAAAAAACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38241978	NES09555046	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28318051					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38241978	NES09555046	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98726645 () rs orientation: forward

Symbol	Name	Function Class
Rr376900	regulatory region 376900	1972 bp upstream
Rr595795	regulatory region 595795	1547 bp distal
Rr595796	regulatory region 595796	602 bp proximal
Rr595797	regulatory region 595797	1938 bp proximal