rs28321964 SNP Detail

Summary

• ID
  rs28321964
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:69315350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGATTTA TCCTGTGAAG
  TTCTGTTTGA GTCTGCAACA GATGCTACGC CTATCACAAA TGGTTGACTA TGTGGGAGTT
  TAAGCAGGAG TATGAACACT AGGAAAGTAT GAACAAATAA GTATCTTAAA GTCCAGAGGA
  AAGATGGAGA AAGGAGTATT AGTTAATAAC CCATTGACTG TGATGAACAA AACCTCTAAT
  K
  GCATCTGTAG CATCCTGGCT GTGATGCACT CAGTTCCTTC AGAGCCAGCA GCCTGTGATG
  CAATGCTCCT ACTGTCTTGG TTGACATATC TTGATTAGTT TCTGTCCCTT GAACTTGGGT
  CCATTGCTCC CCAGGATATA TGTTTCTCAA TTCTTCAAAG AGAGTGGCAA GTGGTAAGAA
  AAGGCTTTAT CATGATCAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38033298	NES09367752	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	T		T	G	G	T		T
ss321157018	CHEV_4_69058147	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28321964					SNP	G	G	G	G	G	G	T	G	G	T	G	T	G	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38033298	NES09367752	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:69315350 () rs orientation: forward

Symbol	Name	Function Class
Gm57077	predicted gene, 57077	1543 bp upstream
Tssr42102	transcription start site region 42102	1624 bp upstream