rs28322916 SNP Detail

Summary

• ID
  rs28322916
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:45627831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGGTTTA CTACCAATAT
  TTCTTTTCTA CTTAGCAACC TTACTGATAC GTCTACCACA TATGATTAGA TAATAAGCAT
  TGTTATTTAT AATACTTTAC AAAATGTTTT CTAATGAAAA ATAAGAACAT AGAGAGGCTG
  TAGTGTGCTT GGAGTCACCC AAGTGGTTAG AATTCACTGG CAGACTTTGA GATAACTTAT
  R
  TGGATAAATG CATGCTTACA GAGATTCAGA TTTATCTTAG GTTTTTATTA TTAAATCAAC
  ATTTCCATTA TTTTGGTATA AAGAAAGAAG TCTGCAGTGA TGTGTGTGCT TTTGTAAAGA
  AAATATAACA GCAATGCTTT TATTTTTTTT TATATTATTT TCTGCTAACC AAAATGGTAT
  TTGTAGTGGC TCACAGATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38093042	NES09370913	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A		G	G	A		G
ss320276513	CHEV_2_45593339	CHEVERUD	SCREENING_POP	f	SNP						G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28322916					SNP	G	G	G	G	A	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38093042	NES09370913	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:45627831 () rs orientation: forward

Symbol	Name	Function Class
Gm13465	predicted gene 13465	within coordinates
Rr556487	regulatory region 556487	1216 bp distal