rs28322917 SNP Detail

Summary

• ID
  rs28322917
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:45627534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCACACAC ATGCACACAC
  ACACACACAC CAAACATGTG AGAGGACACA TACATACACA TATACACATC TTTAATATTC
  CATGTGTGTA TCTTAACAAA AGATCATTAC TTTTTATTTT GAATTTAAAC TAACATTAAT
  GATCAATGTT TTTTCACAGT TGTTACAAGC TTTCGGCAGA GATTTCTGTG CACAGACTCT
  M
  AAATATGTTG ATATAAAGCA GAACTGGTAT TTCTCAAGGG TTAAATGAAT AGATGAAGGA
  TTACAAACAA TGTCTTAGAT CATGGACTGG TAACCTATAA GGTTTACTAC CAATATTTCT
  TTTCTACTTA GCAACCTTAC TGATACGTCT ACCACATATG ATTAGATAAT AAGCATTGTT
  ATTTATAATA CTTTACAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38093043	NES09370910	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	C			A	A	C		A
ss146491194	ENSMUSSNP803938	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						C
ss320276512	CHEV_2_45593042	CHEVERUD	SCREENING_POP	f	SNP							A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28322917					SNP	A	A	A	A	A	C	A	C	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38093043	NES09370910	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:45627534 () rs orientation: forward

Symbol	Name	Function Class
Gm13465	predicted gene 13465	within coordinates
Rr556487	regulatory region 556487	919 bp distal