rs28322920 SNP Detail

Summary

• ID
  rs28322920
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:45626853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAGTTTG TCAGTAAAAA
  TATGAGAGCA TTTGAGCTGA GAATCAGAGG TAAATGGGTA AACTGTACAT CTAAATAGGA
  AACTATTATG CAATGTTGAA ATGAATTACT GTGAAGGCTA GGAGGAAACA GAAAAGAATA
  CTGTGAAGTG ATGTACCTGA CCTGCAAAGT TGCAACACTG TGAACATCCG GTTACACATT
  Y
  TAGGAAAGAT TTAACTGCAA AGTCAGTGGG TTTTAACTAT GAAAGGTAGA AAAGTGCATT
  GCAAACAAGC TTTAAGGCAA GAAAAGTTCT GCAGTATGCT TTCATTGGAC ATGAGCGTTT
  ATATACAGCT TTCAATATGC CTTTTATGGA ATATAAAATA AAGGAGAATT GCTCTTATAT
  AAATTGAGAG TTCTTATTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss38093046	NES09370962	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C		T	C		T
ss320276505	CHEV_2_45592361	CHEVERUD	SCREENING_POP	f	SNP							T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs28322920					SNP	T	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38093046	NES09370962	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:45626853 () rs orientation: forward

Symbol	Name	Function Class
Gm13465	predicted gene 13465	within coordinates
Rr556487	regulatory region 556487	238 bp distal