rs28328271 SNP Detail

Summary

• ID
  rs28328271
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:69314758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAGTTAG TAACATTGCC
  ACTTCTAATA TTCAATAAGA ACTAAATGCT AGCATAGTCA GAATTTGAAA CAATGTAGAA
  ATATGTATGT TAGTGAATAA AACTATTAAC TCTTGATAGC TGAAGGACAC TGTGGTACTT
  ATTTTTAGTT CTGCCTCTAC TCATGCGAGA AGTCATTGAG ACATTTCTAG ATACTTTACA
  R
  GGAACACCTT CCTCAAAATC CACACAATAT TGTTTCACAA TTTTACTCTG TCAAAAACTA
  TCTAAAATAG TTGAAAGGTG CCTAAAGTTG TACAGAAGGG GGAAAAAAAG ACATAAATGT
  ATATAATCGT CTAGATCACA AGCTCTATTT TCTTACCATG TTATGCAGTT TCCAAACAAG
  TCCTCAAAAA GAAGGTTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38033305	NES09367738	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		A	G	G		G
ss321157014	CHEV_4_69057555	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28328271					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38033305	NES09367738	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:69314758 () rs orientation: forward

Symbol	Name	Function Class
Gm57077	predicted gene, 57077	951 bp upstream
Tssr42102	transcription start site region 42102	1032 bp upstream