rs28333153 SNP Detail

Summary

• ID
  rs28333153
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:85308312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTGTGTC CCTGGGTGTG
  GCACCATGCA CTAGAGCATG GGAAACCCAC CAGGGGTCAC ACCTTCAGAG AAGGAAGGAT
  TCTACTGTCT CCAGAAACTC TCCACTGCTA ATAGTTCCTC AGTAAGAAGT GGGGTGTGGA
  GGCAGCAGGG ATATAAAGAG TAAATACCCT CCTAATTTTA CAAGAGAAAA GTGGGGACTA
  Y
  AGCATGTGTC CAACTACTGC CCCCCAAAAG ATGTAAGTTC TTTTTGCAAT AACCTTTAAA
  AATCATTTCA TGGTGAGGCT AATCATATAA AATACAATTT ACCACACATA GAAGAAGAGA
  AAGAAAATAA TTCAAACAAC AGACCAAAAA CAAACAGACA GAAAACAAAC AAAAACAGAC
  CAAAAACAAA CAAACAGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss38214379	NES09586692	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs28333153					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38214379	NES09586692	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:85308312 () rs orientation: forward

Symbol	Name	Function Class
Rr594677	regulatory region 594677	1479 bp proximal
Rr594678	regulatory region 594678	1826 bp proximal
Rr594679	regulatory region 594679	1966 bp proximal
Sh3gl2	SH3-domain GRB2-like 2	695 bp downstream
Tssr37714	transcription start site region 37714	1969 bp downstream
Tssr37715	transcription start site region 37715	1933 bp downstream
Tssr37716	transcription start site region 37716	1836 bp downstream
Tssr37717	transcription start site region 37717	1790 bp downstream
Tssr37718	transcription start site region 37718	1253 bp downstream