rs28333154 SNP Detail

Summary

• ID
  rs28333154
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:85307827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAC TAATTCCAGG ATGAAGAAGA
  R
  CTTGGGGGGA GAGAGTAAGT CCAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38214380	NES09586794	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	G	A		G	G	A	A		G	A	A	G		A
ss45639543	mCV24017746	ABI	CRAMUS_MOUSE	f	SNP		G	G					A		G
ss146901801	ENSMUSSNP1075837	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
ss321194271	CHEV_4_85035494	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28333154					SNP	G	G	G	A	G	G	A	A	G	G	A	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38214380	NES09586794	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:85307827 () rs orientation: forward

Symbol	Name	Function Class
Rr594677	regulatory region 594677	1964 bp proximal
Sh3gl2	SH3-domain GRB2-like 2	210 bp downstream
Tssr37714	transcription start site region 37714	1484 bp downstream
Tssr37715	transcription start site region 37715	1448 bp downstream
Tssr37716	transcription start site region 37716	1351 bp downstream
Tssr37717	transcription start site region 37717	1305 bp downstream
Tssr37718	transcription start site region 37718	768 bp downstream