rs28338385 SNP Detail

Summary

• ID
  rs28338385
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130275919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACCA ATGACCTTCA CAAAATTGCT
  M
  ATCTTTTTTC TTGTGACATC CAGGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37716276	NES09165268	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	A	C		A	C	A	A		A	C	C		A
ss45696109	mCV22588751	ABI	CRAMUS_MOUSE	f	SNP		A	C					C		C
ss147462186	ENSMUSSNP747556	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C							C
ss321317899	CHEV_4_130059373	CHEVERUD	SCREENING_POP	f	SNP													A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28338385					SNP	A	A	C	C	C	A	C	C	A	C	A	A	A	A	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37716276	NES09165268	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130275919 () rs orientation: forward

Symbol	Name	Function Class
2900017G11Rik	RIKEN cDNA 2900017G11 gene	1341 bp downstream
Rr600533	regulatory region 600533	1505 bp distal
Snrnp40	small nuclear ribonucleoprotein 40 (U5)	within coordinates