rs28338393 SNP Detail

Summary

• ID
  rs28338393
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130274208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGACTTGAC CTGTTACCAT CCCAGAGGCA AGGGATATAA
  GTTTAGTCCC TAGTGGCCGT GTGGTGAAAG GAGAGAGCTG ACTTCTGCAA GCTGTCCTCT
  S
  GCCTCCATGA GTGGGGCACA CTCTTCAAAT ACATGAGTAA ATACATGCAA TGCTAATTTG
  GTATGTACTT ATTTTATGTT AGTGCTTGGG CTGGAGAGAT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37716284	NES09165331	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	C	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28338393					SNP	G	C	C	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37716284	NES09165331	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130274208 () rs orientation: forward

Symbol	Name	Function Class
2900017G11Rik	RIKEN cDNA 2900017G11 gene	within coordinates
Rr600533	regulatory region 600533	185 bp proximal
Snrnp40	small nuclear ribonucleoprotein 40 (U5)	within coordinates