rs28338396 SNP Detail

Summary

• ID
  rs28338396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:130273669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGACACAA GATCAGATCA
  TCATCGTGTT GCTGTCACTC TGGATTACAC CTTCACAACA ATACATCATG AAGGAAGTTG
  GTGGTAGAGA TGGTGATGAT AACGTTATCT CTAGTATGTG AAGAGTAGAC AGACAGACAG
  AACCCAGAGT TTGGATCCAC AGTCATACCC AAATTTATAA AAAGCACTTT GAAAAGTTTT
  Y
  GGTACTATTT GATTTCTTCC TTCCCTTTCA TTCTTCAGTT CCTTGTCCCC TGGTTGTTTC
  TAATAGTGGG ACCTCTGCTA CTGTGGATCT ATAGCTGCAG TTCTTTGAAA GGTCGCCTGT
  GATGGTTAGT ATTGTGTCCT TGACAGGTGG GTCTAGACTC CCCTGGGAGA CTAATTTCTG
  GGCATGCCTG TGAGGGATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37716287	NES09165352	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28338396					SNP	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37716287	NES09165352	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130273669 () rs orientation: forward

Symbol	Name	Function Class
2900017G11Rik	RIKEN cDNA 2900017G11 gene	34 bp upstream
Rr600533	regulatory region 600533	724 bp proximal
Snrnp40	small nuclear ribonucleoprotein 40 (U5)	Intron