rs28338397 SNP Detail

Summary

• ID
  rs28338397
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130273114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCACTTGGG CTTACAAGGA
  CTTGTCTTGG ATTCTAGACC CAGTCCCACC ATTTTCTAGT GTTGTGATTG CCACCTGGTC
  TTCAGCTCCT TTAAGCCCCA GTTTCCTGGA GTGAGCAGCT AAGGTGGCAA AGACTCAGTG
  TCTCCCCATG GTGTTGGGAG GTTCAGCCCT AGACATGGCA AGTGCCAGTT TACAGGCAGT
  Y
  CTGGGGCTGT ACTTGCTGTC TGCCTCTGCA TCTGCCTATT TTGAGTCTGT GAGGAGCTCA
  GAGACTATCT TGCCCCAACC CCTCTCTCCA TTGCTTTTAC ACACGCGCCC ACACATGCAT
  CTTATGTAGC CCAGGCTTCA GGTCTGAGTC AAGCTTTGTA TGTAGTTGAG GATGTCCTTC
  CCTGCTCCTC TTAGTAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37716288	NES09165381	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28338397					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37716288	NES09165381	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130273114 () rs orientation: forward

Symbol	Name	Function Class
2900017G11Rik	RIKEN cDNA 2900017G11 gene	589 bp upstream
Rr600532	regulatory region 600532	1629 bp distal
Rr600533	regulatory region 600533	1279 bp proximal
Snrnp40	small nuclear ribonucleoprotein 40 (U5)	within coordinates