rs28338399 SNP Detail

Summary

• ID
  rs28338399
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130273042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTTTCCT AAGCTTGTCC
  AAGAAAAGAC AAAAGACATC AGAGAAAGGC CATGAGCGTT TGGCGGTGCA GTATCACTTG
  GGCTTACAAG GACTTGTCTT GGATTCTAGA CCCAGTCCCA CCATTTTCTA GTGTTGTGAT
  TGCCACCTGG TCTTCAGCTC CTTTAAGCCC CAGTTTCCTG GAGTGAGCAG CTAAGGTGGC
  R
  AAGACTCAGT GTCTCCCCAT GGTGTTGGGA GGTTCAGCCC TAGACATGGC AAGTGCCAGT
  TTACAGGCAG TTCTGGGGCT GTACTTGCTG TCTGCCTCTG CATCTGCCTA TTTTGAGTCT
  GTGAGGAGCT CAGAGACTAT CTTGCCCCAA CCCCTCTCTC CATTGCTTTT ACACACGCGC
  CCACACATGC ATCTTATGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37716290	NES09165379	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28338399					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37716290	NES09165379	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130273042 () rs orientation: forward

Symbol	Name	Function Class
2900017G11Rik	RIKEN cDNA 2900017G11 gene	661 bp upstream
Rr600532	regulatory region 600532	1557 bp distal
Rr600533	regulatory region 600533	1351 bp proximal
Snrnp40	small nuclear ribonucleoprotein 40 (U5)	within coordinates