rs28338402 SNP Detail

Summary

• ID
  rs28338402
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130272877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCT TGTCCAAGAA AAGACAAAAG
  R
  CATCAGAGAA AGGCCATGAG CGTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37716293	NES09165412	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	A	A	A	G	A		A	A	A	A		G
ss45684245	mCV22588763	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					A
ss147462173	ENSMUSSNP492124	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss321317889	CHEV_4_130056331	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28338402					SNP	G	G	A	A	G	A	A	A	G	A	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37716293	NES09165412	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130272877 () rs orientation: forward

Symbol	Name	Function Class
2900017G11Rik	RIKEN cDNA 2900017G11 gene	826 bp upstream
Rr600532	regulatory region 600532	1392 bp distal
Rr600533	regulatory region 600533	1516 bp proximal
Snrnp40	small nuclear ribonucleoprotein 40 (U5)	within coordinates