rs28338404 SNP Detail

Summary

• ID
  rs28338404
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130271999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGTGACCT TCAATGACAC GAGCGATCAG ATTATCTCTG
  GTGGAATAGA TAATGACATC AAGGTATATT TGTTTATCTT TCACCTATAT ATCAGAAGCT
  R
  GTCTTTTTTA AATGTTGAGA TTGCAGGAGG TTGGCACTTA ATGCCAACTA AAAGGAAGAA
  AGTGAAATTC ACTTTCTTTC TATGCTGTTC TAATCCTAAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37716295	NES09165466	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28338404					SNP	A	A	A	A	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37716295	NES09165466	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130271999 () rs orientation: forward

Symbol	Name	Function Class
2900017G11Rik	RIKEN cDNA 2900017G11 gene	1704 bp upstream
Rr600531	regulatory region 600531	1320 bp distal
Rr600532	regulatory region 600532	514 bp distal
Snrnp40	small nuclear ribonucleoprotein 40 (U5)	within coordinates