rs29030184 SNP Detail

Summary

• ID
  rs29030184
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:78962196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGCCTAG TGCACTATCT
  CTGCCTTATA CACAGCCTCA ACACCAGCCT CGGGCCTTCG ATGCTTTGTT TTAATTTGAC
  AGTCGGATTC CCCTTGTGTG TGCCAGTTCT AAGTTGTCTG CTAGGTGTGG GCCAAAGGGA
  GGTTCCTCAT GGAAAACCTC GGCCCTAGGC GGACCCAGCG GATGCCCGCA GCAGCTGAGA
  Y
  GATCCACAGG AAGGGCTTGG CTCTTCGCCA CCGCTGCCCC TCCACCCCCA AGAGTGTCAG
  GGCCAATGGG GAATCTGGAA CCCCTGGAGG CGGCAGGAGG CAGACCCACT GCGAGTACAC
  ACTGAGTCTG AGAGTGCAGA GTCCCGACCA ACTCCGGTGG ACCCATCCAA CCTTCAGCCC
  CTTCATTATT GGTCATTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38356606	NES09689548	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29030184					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38356606	NES09689548	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:78962196 () rs orientation: forward

Symbol	Name	Function Class
Rr395274	regulatory region 395274	1224 bp upstream
Tssr163724	transcription start site region 163724	106 bp upstream